| Rank | Jugador | Equipo | Goles |
|---|---|---|---|
| 1 | Zakaria Beglarishvili | Levadia Tallinn | 21(5) |
| 2 | Robi Saarma | Paide Linnameeskond | 16(3) |
| 3 | Sten Reinkort | Kuressaare | 14(4) |
| 4 | Konstantin Vassiljev | Flora | 13(1) |
| 5 | Denys Dedechko | Trans | 12(5) |
| 6 | Alex Tamm | Kalju FC | 12(1) |
| 7 | Nikita Ivanov | Legion | 12(1) |
| 8 | Rauno Alliku | Flora | 11 |
| 9 | Martin Miller | Flora | 11 |
| 10 | Sergei Zenjov | Flora | 10(3) |
| 11 | Danil Kuraksin | Flora | 10 |
| 12 | Ats Purje | Kalev Tallinn | 10 |
| 13 | Liliu | Levadia Tallinn | 9 |
| 14 | Mattias Männilaan | Kuressaare | 9 |
| 15 | Kaspar Paur | Kalju FC | 9(2) |
| 16 | Aleksandr Volkov | Kalju FC | 9(1) |
| 17 | Kaimar Saag | Paide Linnameeskond | 9 |
| 18 | Deabeas Owusu-Sekyere | Paide Linnameeskond | 9(1) |
| 19 | Kristofer Piht | Paide Linnameeskond | 9 |
| 20 | Kevin Mätas | Tammeka | 9(4) |
| 21 | Mark Oliver Roosnupp | Levadia Tallinn | 8 |
| 22 | Foday Trawally | Kalev Tallinn | 8 |
| 23 | Otto-Robert Lipp | Kuressaare | 7 |
| 24 | Ronaldo Tiismaa | Vaprus | 7 |
| 25 | Henrik Ojamaa | Flora | 6(1) |
| 26 | Mark Anders Lepik | Flora | 6(1) |
| 27 | Robert Kirss | Levadia Tallinn | 6 |
| 28 | Oleksandr Kozhevnikov | Trans | 6 |
| 29 | Sander Laht | Kuressaare | 6 |
| 30 | Ioan Yakovlev | Kalev Tallinn | 6(2) |
| 31 | Maksim Gussev | Kalju FC | 6 |
| 32 | Bubacarr Tambedou | Paide Linnameeskond | 6 |
| 33 | Pavel Domov | Legion | 6(3) |
| 34 | Markus Vaherna | Legion | 6 |
| 35 | Kevin Kauber | Vaprus | 6(3) |
| 36 | Ken Kallaste | Flora | 5 |
| 37 | Aleksandr Sapovalov | Flora | 5 |
| 38 | Aleksandr Zakarlyuka | Trans | 5 |
| 39 | Volodymyr Pryiomov | Trans | 5(1) |
| 40 | Igor Subbotin | Kalju FC | 5(1) |
| 41 | Henrik Pürg | Flora | 4 |
| 42 | Markus Poom | Flora | 4 |
| 43 | Marko Putincanin | Levadia Tallinn | 4(2) |
| 44 | Maximiliano Uggè | Levadia Tallinn | 4 |
| 45 | Jevgeni Demidov | Trans | 4 |
| 46 | Märten Pajunurm | Kuressaare | 4(2) |
| 47 | Vladimir Avilov | Kalju FC | 4 |
| 48 | Sergei Mosnikov | Paide Linnameeskond | 4 |
| 49 | Mechini Gomis | Paide Linnameeskond | 4 |
| 50 | Henri Käblik | Tammeka | 4 |
| 51 | Taaniel Usta | Vaprus | 4 |
| 52 | Frank Liivak | Levadia Tallinn | 3(1) |
| 53 | Rasmus Peetson | Levadia Tallinn | 3 |
| 54 | Ernest Agyiri | Levadia Tallinn | 3 |
| 55 | Arseni Kovaltsuk | Trans | 3 |
| 56 | Nikita Mihhailov | Trans | 3 |
| 57 | Michael Schjönning-Larsen | Kuressaare | 3 |
| 58 | Hannes Anier | Kalev Tallinn | 3 |
| 59 | Kaspar Laur | Kalev Tallinn | 3 |
| 60 | Giannis Tsivelekidis | Kalju FC | 3 |
| 61 | Siim Luts | Paide Linnameeskond | 3 |
| 62 | Abdul Yusif | Paide Linnameeskond | 3 |
| 63 | Kristjan Pelt | Paide Linnameeskond | 3 |
| 64 | Reio Laabus | Tammeka | 3 |
| 65 | Tanel Tammik | Tammeka | 3 |
| 66 | Aleksandr Kukharev | Tammeka | 3 |
| 67 | Sander Sinilaid | Vaprus | 3 |
| 68 | Virgo Vallik | Vaprus | 3 |
| 69 | Kristjan Kask | Vaprus | 3 |
| 70 | Tristan Koskor | Flora | 2 |
| 71 | Bogdan Vastsuk | Levadia Tallinn | 2 |
| 72 | Murad Valiyev | Levadia Tallinn | 2 |
| 73 | Brent Lepistu | Levadia Tallinn | 2 |
| 74 | Eduard Golovljov | Trans | 2 |
| 75 | Gleb Pevtsov | Trans | 2 |
| 76 | Ramol Sillamaa | Kalev Tallinn | 2 |
| 77 | Tristan Teeväli | Kalev Tallinn | 2 |
| 78 | Daniil Petrunin | Kalev Tallinn | 2 |
| 79 | Trevor Elhi | Kalju FC | 2 |
| 80 | Yohan Mannone | Kalju FC | 2 |
| 81 | Andre Frolov | Paide Linnameeskond | 2 |
| 82 | Dominique Simon | Paide Linnameeskond | 2 |
| 83 | Erko Tougjas | Legion | 2 |
| 84 | Aleksandr Volodin | Legion | 2 |
| 85 | Nikita Grankin | Legion | 2 |
| 86 | Daniel Fedotov | Legion | 2 |
| 87 | Taijo Teniste | Tammeka | 2 |
| 88 | Gerdo Juhkam | Tammeka | 2 |
| 89 | Sander Kapper | Tammeka | 2 |
| 90 | Henri Välja | Tammeka | 2 |
| 91 | Martin Kase | Vaprus | 2 |
| 92 | Magnus Villota | Vaprus | 2 |
| 93 | Joonas Tamm | Flora | 1 |
| 94 | Michael Lilander | Flora | 1 |
| 95 | Vladislav Kreida | Flora | 1 |
| 96 | Markus Soomets | Flora | 1 |
| 97 | Artem Shchedryi | Levadia Tallinn | 1 |
| 98 | Artur Pikk | Levadia Tallinn | 1 |
| 99 | Bourama Fomba | Levadia Tallinn | 1 |
| 100 | artem shchedry | Levadia Tallinn | 1 |
