| Rank | Jugador | Equipo | Goles |
|---|---|---|---|
| 1 | David Lafata | Sparta Prague | 20 |
| 2 | Milan Skoda | Slavia Praha | 19 |
| 3 | Libor Dosek | Slovácko | 16 |
| 4 | Josef Sural | Slovan Liberec | 12 |
| 5 | Ajdin Mahmutovic | Viktoria Plzen | 12 |
| 6 | Filip Novak | Jablonec | 11 |
| 7 | Daniel Kolar | Viktoria Plzen | 11 |
| 8 | Borek Dockal | Sparta Prague | 10 |
| 9 | Tomas Wagner | Mladá Boleslav | 10 |
| 10 | Vaclav Kadlec | Sparta Prague | 9 |
| 11 | Jakub Reznicek | FK Pribram | 9 |
| 12 | P. Dvořák | Hradec Kralove | 9 |
| 13 | Jan Kopic | Jablonec | 8 |
| 14 | Jean-David Beauguel | Dukla Praha | 8 |
| 15 | Jakub Hora | České Budějovice | 7 |
| 16 | Martin Pospisil | Jablonec | 7 |
| 17 | Martin Dolezal | Jablonec | 7 |
| 18 | Jasmin Scuk | Mladá Boleslav | 7 |
| 19 | Elvis Bratanovic | Bohemians 1905 | 7 |
| 20 | Matus Mikus | Bohemians 1905 | 7 |
| 21 | Lubos Kalouda | Slovácko | 7 |
| 22 | Dzon Delarge | Slovan Liberec | 6 |
| 23 | Tomas Horava | Viktoria Plzen | 6 |
| 24 | Skalak | Mladá Boleslav | 6 |
| 25 | Josef Jindrisek | Bohemians 1905 | 6 |
| 26 | Muris Mesanovic | Vysočina Jihlava | 6 |
| 27 | Egon Vuch | Teplice | 5 |
| 28 | Ruslan Mingazov | Jablonec | 5 |
| 29 | Roman Bednar | FK Pribram | 5 |
| 30 | Martin Zeman | FK Pribram | 5 |
| 31 | Ondrej Vanek | Viktoria Plzen | 5 |
| 32 | Stanislav Tecl | Viktoria Plzen | 5 |
| 33 | Jakub Rada | Bohemians 1905 | 5 |
| 34 | Michal Frydrych | Baník Ostrava | 4 |
| 35 | Tomas Prikryl | Sparta Prague | 4 |
| 36 | Jaromir Zmrhal | Slavia Praha | 4 |
| 37 | Roman Potocny | Teplice | 4 |
| 38 | Jan Krob | Teplice | 4 |
| 39 | F. Litsingi | Teplice | 4 |
| 40 | Ján Greguš | Jablonec | 4 |
| 41 | Pavel Zavadil | Zbrojovka Brno | 4 |
| 42 | Miroslav Markovic | Zbrojovka Brno | 4 |
| 43 | Stanislav Vavra | Zbrojovka Brno | 4 |
| 44 | Jan Sykora | Zbrojovka Brno | 4 |
| 45 | David Pasek | Zbrojovka Brno | 4 |
| 46 | Frantisek Rajtoral | Viktoria Plzen | 4 |
| 47 | Tomas Kucera | Viktoria Plzen | 4 |
| 48 | Jan Holenda | Viktoria Plzen | 4 |
| 49 | Vaclav Pilar | Viktoria Plzen | 4 |
| 50 | Lukas Magera | Mladá Boleslav | 4 |
| 51 | Michal Duris | Mladá Boleslav | 4 |
| 52 | Haris Harba | Vysočina Jihlava | 4 |
| 53 | Ales Cermak | Hradec Kralove | 4 |
| 54 | David Vanecek | Hradec Kralove | 4 |
| 55 | Tomas Berger | Dukla Praha | 4 |
| 56 | Michal Travnik | Slovácko | 4 |
| 57 | Jiri Valenta | Slovácko | 4 |
| 58 | Jaroslav Divis | Slovácko | 4 |
| 59 | Davor Kukec | Baník Ostrava | 3 |
| 60 | Krejci | Sparta Prague | 3 |
| 61 | Josef Husbauer | Sparta Prague | 3 |
| 62 | Kaderábek | Sparta Prague | 3 |
| 63 | Jiri Bilek | Slavia Praha | 3 |
| 64 | Bekim Balaj | Slavia Praha | 3 |
| 65 | Vojtech Hadascok | Slovan Liberec | 3 |
| 66 | Jiri Fleisman | Slovan Liberec | 3 |
| 67 | David Pavelka | Slovan Liberec | 3 |
| 68 | Michal Skoda | České Budějovice | 3 |
| 69 | Jiri Kladrubsky | České Budějovice | 3 |
| 70 | Jaroslav Machovec | České Budějovice | 3 |
| 71 | Eugène Salami | Teplice | 3 |
| 72 | David Jablonsky | Teplice | 3 |
| 73 | Daniel Rossi | Jablonec | 3 |
| 74 | Tomas Zapotocny | FK Pribram | 3 |
| 75 | Josef Hnanicek | FK Pribram | 3 |
| 76 | Jakub Jugas | Zbrojovka Brno | 3 |
| 77 | Roman Hubnik | Viktoria Plzen | 3 |
| 78 | Milan Petrzela | Viktoria Plzen | 3 |
| 79 | Radim Reznik | Viktoria Plzen | 3 |
| 80 | Jan Kovarik | Viktoria Plzen | 3 |
| 81 | Jan Chramosta | Viktoria Plzen | 3 |
| 82 | Lukas Vaculik | Vysočina Jihlava | 3 |
| 83 | Peter Sulek | Vysočina Jihlava | 3 |
| 84 | Vladimir Kukol | Vysočina Jihlava | 3 |
| 85 | Emir Halilovic | Hradec Kralove | 3 |
| 86 | Marek Hanousek | Dukla Praha | 3 |
| 87 | Roman Polom | Dukla Praha | 3 |
| 88 | Aldin Cajic | Dukla Praha | 3 |
| 89 | Jakub Povazanec | Dukla Praha | 3 |
| 90 | Milan Kerbr | Slovácko | 3 |
| 91 | Milan Baros | Baník Ostrava | 2 |
| 92 | Francis Narh | Baník Ostrava | 2 |
| 93 | Daniel Holzer | Baník Ostrava | 2 |
| 94 | Jakub Brabec | Sparta Prague | 2 |
| 95 | Martin Latka | Slavia Praha | 2 |
| 96 | Levan Kenia | Slavia Praha | 2 |
| 97 | Martin Frydek | Slovan Liberec | 2 |
| 98 | Kevin Luckassen | Slovan Liberec | 2 |
| 99 | Marek Bakos | Slovan Liberec | 2 |
| 100 | Stepan Kores | České Budějovice | 2 |
