| Rank | Jugador | Equipo | Goles |
|---|---|---|---|
| 1 | David Lafata | Sparta Prague | 15 |
| 2 | Milan Skoda | Slavia Praha | 15 |
| 3 | Muris Mesanovic | Slavia Praha | 12 |
| 4 | Michal Skoda | Zbrojovka Brno | 10 |
| 5 | Michael Krmencik | Viktoria Plzen | 10 |
| 6 | Jan Chramosta | Mladá Boleslav | 9 |
| 7 | Davis Ikaunieks | Vysočina Jihlava | 9 |
| 8 | Martin Fillo | Teplice | 8 |
| 9 | Martin Dolezal | Jablonec | 8 |
| 10 | Tomas Pilik | FK Pribram | 8 |
| 11 | Marek Bakos | Viktoria Plzen | 8 |
| 12 | Gol-Gol Mebrahtu | Mladá Boleslav | 8 |
| 13 | Jaromir Zmrhal | Slavia Praha | 7 |
| 14 | David Vanecek | Teplice | 7 |
| 15 | Ondrej Mihalik | Jablonec | 7 |
| 16 | Jakub Reznicek | Zbrojovka Brno | 7 |
| 17 | Jan Holenda | Dukla Praha | 7 |
| 18 | Lukas Budinsky | Karviná | 7 |
| 19 | Tomas Wagner | Karviná | 7 |
| 20 | Josef Sural | Sparta Prague | 6 |
| 21 | Michael Ngadeu | Slavia Praha | 6 |
| 22 | Stanislav Tecl | Slavia Praha | 6 |
| 23 | Haris Harba | Tescoma Zlin | 6 |
| 24 | Mirzad Mehanovic | Jablonec | 6 |
| 25 | Tomas Horava | Viktoria Plzen | 6 |
| 26 | Lukas Hejda | Viktoria Plzen | 6 |
| 27 | Peter Olayinka | Dukla Praha | 6 |
| 28 | Dame Diop | Tescoma Zlin | 5 |
| 29 | Milan Baros | Slovan Liberec | 5 |
| 30 | Jakub Hora | Teplice | 5 |
| 31 | Jan Rezek | FK Pribram | 5 |
| 32 | Tomas Prikryl | Mladá Boleslav | 5 |
| 33 | Jan Pazler | Hradec Kralove | 5 |
| 34 | Néstor Albiach | Dukla Praha | 5 |
| 35 | Tomas Zajic | Slovácko | 5 |
| 36 | Borek Dockal | Sparta Prague | 4 |
| 37 | Matej Pulkrab | Sparta Prague | 4 |
| 38 | Michal Frydrych | Slavia Praha | 4 |
| 39 | Barak | Slavia Praha | 4 |
| 40 | Ubong Ekpai | Slovan Liberec | 4 |
| 41 | Daniel Bartl | Slovan Liberec | 4 |
| 42 | Milan Kerbr | Slovan Liberec | 4 |
| 43 | Marek Cervenka | Teplice | 4 |
| 44 | Roman Potocny | Teplice | 4 |
| 45 | Lukas Magera | Mladá Boleslav | 4 |
| 46 | Petr Hronek | Vysočina Jihlava | 4 |
| 47 | P. Dvořák | Vysočina Jihlava | 4 |
| 48 | Petr Schwarz | Hradec Kralove | 4 |
| 49 | Tomas Malinsky | Hradec Kralove | 4 |
| 50 | Marek Janecka | Karviná | 4 |
| 51 | Marek Havlík | Slovácko | 4 |
| 52 | Michal Kadlec | Sparta Prague | 3 |
| 53 | Lukas Julis | Sparta Prague | 3 |
| 54 | Vaclav Kadlec | Sparta Prague | 3 |
| 55 | Karavaev | Sparta Prague | 3 |
| 56 | Josef Husbauer | Slavia Praha | 3 |
| 57 | Ruslan Mingazov | Slavia Praha | 3 |
| 58 | Vukadin Vukadinovic | Tescoma Zlin | 3 |
| 59 | Jakub Jugas | Tescoma Zlin | 3 |
| 60 | Komlichenko | Slovan Liberec | 3 |
| 61 | Radim Breite | Slovan Liberec | 3 |
| 62 | Radek Voltr | Slovan Liberec | 3 |
| 63 | Jan Vosahlik | Teplice | 3 |
| 64 | Michal Jerabek | Teplice | 3 |
| 65 | Michal Travnik | Jablonec | 3 |
| 66 | Patrik Brandner | FK Pribram | 3 |
| 67 | Jan Suchan | FK Pribram | 3 |
| 68 | Jakub Prichystal | Zbrojovka Brno | 3 |
| 69 | Andreas Ivanschitz | Viktoria Plzen | 3 |
| 70 | Michal Duris | Viktoria Plzen | 3 |
| 71 | Lukas Zeleznik | Mladá Boleslav | 3 |
| 72 | Douglas Silva | Mladá Boleslav | 3 |
| 73 | Petr Mares | Mladá Boleslav | 3 |
| 74 | Dominik Masek | Bohemians 1905 | 3 |
| 75 | Jean-David Beauguel | Dukla Praha | 3 |
| 76 | Filip Panák | Karviná | 3 |
| 77 | Pavol Jurco | Karviná | 3 |
| 78 | Jan Sisler | Karviná | 3 |
| 79 | F. Koné | Slovácko | 3 |
| 80 | Jaroslav Divis | Slovácko | 3 |
| 81 | Jan Navratil | Slovácko | 3 |
| 82 | Martin Frydek | Sparta Prague | 2 |
| 83 | Gino van Kessel | Slavia Praha | 2 |
| 84 | Jan Sykora | Slavia Praha | 2 |
| 85 | Josef Hnanicek | Tescoma Zlin | 2 |
| 86 | Lukas Holik | Tescoma Zlin | 2 |
| 87 | Tomas Hajek | Tescoma Zlin | 2 |
| 88 | Tomas Poznar | Tescoma Zlin | 2 |
| 89 | Marko Jordan | Tescoma Zlin | 2 |
| 90 | Robert Bartolomeu | Tescoma Zlin | 2 |
| 91 | Milos Kopecny | Tescoma Zlin | 2 |
| 92 | Martin Kouril | Slovan Liberec | 2 |
| 93 | Jan Mikula | Slovan Liberec | 2 |
| 94 | Vit Benes | Jablonec | 2 |
| 95 | Adam Zrelak | Jablonec | 2 |
| 96 | Jaroslav Tregler | FK Pribram | 2 |
| 97 | Jan Polák | Zbrojovka Brno | 2 |
| 98 | Boris Tashchy | Zbrojovka Brno | 2 |
| 99 | Pavel Zavadil | Zbrojovka Brno | 2 |
| 100 | Milan Petrzela | Viktoria Plzen | 2 |
