| Rank | Jugador | Equipo | Goles |
|---|---|---|---|
| 1 | Ryoichi Maeda | Júbilo Iwata | 17 |
| 2 | Joshua Kennedy | Nagoya Grampus | 17 |
| 3 | Edmílson | Urawa Red Diamonds | 16 |
| 4 | Marcio Richardes | Albirex Niigata | 16 |
| 5 | Shoki Hirai | Gamba Osaka | 14 |
| 6 | Adriano | Cerezo Osaka | 14 |
| 7 | Juninho | Kawasaki Frontale | 14 |
| 8 | Keiji Tamada | Nagoya Grampus | 13 |
| 9 | Jungo Fujimoto | Shimizu S-Pulse | 13 |
| 10 | Okazaki | Shimizu S-Pulse | 13 |
| 11 | Marquinhos | Kashima Antlers | 11 |
| 12 | Yeong-cheol Jo | Albirex Niigata | 11 |
| 13 | Tadanari Lee | Sanfrecce Hiroshima | 11 |
| 14 | Yong-gi Ryang | Vegalta Sendai | 11 |
| 15 | Hisato Sato | Sanfrecce Hiroshima | 10 |
| 16 | Yuzo Tashiro | Montedio Yamagata | 10 |
| 17 | Robson Ponté | Urawa Red Diamonds | 9 |
| 18 | Popó | Vissel Kobe | 9 |
| 19 | Naoki Ishihara | Omiya Ardija | 9 |
| 20 | Yoshiro Abe | Shonan Bellmare | 9 |
| 21 | Kazuma Watanabe | Yokohama F. Marinos | 8 |
| 22 | Takuya Nozawa | Kashima Antlers | 8 |
| 23 | Shinzo Koroki | Kashima Antlers | 8 |
| 24 | Hideo Hashimoto | Gamba Osaka | 8 |
| 25 | Frode Johnsen | Shimizu S-Pulse | 8 |
| 26 | Masaru Kurotsu | Kawasaki Frontale | 8 |
| 27 | Rafael Marques | Omiya Ardija | 8 |
| 28 | Fernandinho | Vegalta Sendai | 8 |
| 29 | Lucas | Gamba Osaka | 7 |
| 30 | T. Usami | Gamba Osaka | 7 |
| 31 | Masashi Oguro | Tokyo | 7 |
| 32 | Sota Hirayama | Tokyo | 7 |
| 33 | Kagawa | Cerezo Osaka | 7 |
| 34 | Renatinho | Kawasaki Frontale | 7 |
| 35 | Vitor Junior | Kawasaki Frontale | 7 |
| 36 | Gilsinho | Júbilo Iwata | 6 |
| 37 | Shingo Hyodo | Yokohama F. Marinos | 6 |
| 38 | Tulio | Nagoya Grampus | 6 |
| 39 | Yuki Fukaya | Omiya Ardija | 6 |
| 40 | Diego Souza | Kyoto Sanga | 6 |
| 41 | Shunsuke Nakamura | Yokohama F. Marinos | 5 |
| 42 | Koji Yamase | Yokohama F. Marinos | 5 |
| 43 | Yasuyuki Konno | Tokyo | 5 |
| 44 | Amaral | Cerezo Osaka | 5 |
| 45 | Ryuji Bando | Cerezo Osaka | 5 |
| 46 | Chong Tese | Kawasaki Frontale | 5 |
| 47 | Tomotaka Kitamura | Montedio Yamagata | 5 |
| 48 | Júnior Dutra | Kyoto Sanga | 5 |
| 49 | Yosuke Kashiwagi | Urawa Red Diamonds | 4 |
| 50 | Osako | Kashima Antlers | 4 |
| 51 | Igor Burzanovic | Nagoya Grampus | 4 |
| 52 | Danílson Córdoba | Nagoya Grampus | 4 |
| 53 | Mu Kanazaki | Nagoya Grampus | 4 |
| 54 | Keun-ho Lee | Gamba Osaka | 4 |
| 55 | Sota Nakazawa | Gamba Osaka | 4 |
| 56 | Tomokazu Myojin | Gamba Osaka | 4 |
| 57 | Ken Tokura | Vissel Kobe | 4 |
| 58 | Yoshito Okubo | Vissel Kobe | 4 |
| 59 | Park Kang-Jo | Vissel Kobe | 4 |
| 60 | Takayuki Yoshida | Vissel Kobe | 4 |
| 61 | Akihiro Hyodo | Shimizu S-Pulse | 4 |
| 62 | Michael | Albirex Niigata | 4 |
| 63 | Hideo Oshima | Albirex Niigata | 4 |
| 64 | T. Makino | Sanfrecce Hiroshima | 4 |
| 65 | Yojiro Takahagi | Sanfrecce Hiroshima | 4 |
| 66 | Inui | Cerezo Osaka | 4 |
| 67 | Akihiro Ienaga | Cerezo Osaka | 4 |
| 68 | Hiroshi Kiyotake | Cerezo Osaka | 4 |
| 69 | Kengo Nakamura | Kawasaki Frontale | 4 |
| 70 | Takuro Yajima | Kawasaki Frontale | 4 |
| 71 | Makoto Kakuda | Kyoto Sanga | 4 |
| 72 | Takayuki Nakahara | Vegalta Sendai | 4 |
| 73 | Shingo Akamine | Vegalta Sendai | 4 |
| 74 | Yutaka Tahara | Shonan Bellmare | 4 |
| 75 | Emerson | Shonan Bellmare | 4 |
| 76 | Norihiro Nishi | Júbilo Iwata | 3 |
| 77 | Sho Naruoka | Júbilo Iwata | 3 |
| 78 | Daisuke Nasu | Júbilo Iwata | 3 |
| 79 | Takashi Amano | Yokohama F. Marinos | 3 |
| 80 | Norihisa Shimizu | Yokohama F. Marinos | 3 |
| 81 | Yuji Ono | Yokohama F. Marinos | 3 |
| 82 | Yuki Abe | Urawa Red Diamonds | 3 |
| 83 | Sergio Ariel Escudero | Urawa Red Diamonds | 3 |
| 84 | Koji Nakata | Kashima Antlers | 3 |
| 85 | Mitsuo Ogasawara | Kashima Antlers | 3 |
| 86 | Daiki Iwamasa | Kashima Antlers | 3 |
| 87 | Jeong-soo Lee | Kashima Antlers | 3 |
| 88 | Yasuhito Endo | Gamba Osaka | 3 |
| 89 | Hayato Sasaki | Gamba Osaka | 3 |
| 90 | Takahiro Futagawa | Gamba Osaka | 3 |
| 91 | Botti | Vissel Kobe | 3 |
| 92 | Eddy Bosnar | Shimizu S-Pulse | 3 |
| 93 | Genki Omae | Shimizu S-Pulse | 3 |
| 94 | Takuma Edamura | Shimizu S-Pulse | 3 |
| 95 | Masato Morishige | Tokyo | 3 |
| 96 | Kentaro Shigematsu | Tokyo | 3 |
| 97 | Yuta Mikado | Albirex Niigata | 3 |
| 98 | Isao Homma | Albirex Niigata | 3 |
| 99 | Kisho Yano | Albirex Niigata | 3 |
| 100 | Satoru Yamagishi | Sanfrecce Hiroshima | 3 |
